Ubiquitin (PDB 1UBQ) — click a residue
Same first 15 residues as the mutation explorer above, now placed in the real, experimentally solved 3D structure. Click a position to see exactly where it sits in the fold — and how tightly the backbone curls around it.
Structure (1UBQ)
selected residue
Cα(i−1)–Cα(i+1) span
rest of chain
secondary structure
computing…
Cα(i−1)–Cα(i+1) distance
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Loading structure…
Secondary structure (helix / sheet / coil) is assigned live by 3Dmol.js from the actual 1UBQ coordinates, not looked up from a table. The Cα(i−1)–Cα(i+1) distance is measured directly off the crystal structure too — it's a rough proxy for how sharply the backbone bends at that point: shorter means a tighter turn. Position 10 is the one discussed above: it sits in a short, tight loop, and glycine — the only amino acid with no side chain — is what lets the backbone fold back on itself that sharply without two atoms crashing into each other. Try the other positions to see how much straighter (and less special) most of the chain looks by comparison.